PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA5313
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 221aa    MW: 24163.9 Da    PI: 6.7972
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA5313genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000336688123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              ++C++C++ F ++  L  H++ H
  Tp57577_TGAC_v2_mRNA5313 66 FSCNYCKRKFFSSQALGGHQNAH 88
                              89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.51E-66394No hitNo description
PROSITE profilePS5015711.3236693IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MMIPNLNLEP ENQSEAPNDH LDSSMTLDLT LNFSSSDSEL KGSSDASSEV GAGEDQAAPN  60
ITPRVFSCNY CKRKFFSSQA LGGHQNAHKR ERTMAKRAMR MGMFTERYTS LASLPLHGSP  120
FRSLGVEAHS AMHQRSHVQP SSSMRAPDMR ASAKFDRNHF GSLVYVEDDD VGFFWPGSFR  180
QVDQGGGINI GHPQTSNSSF TPMEPPRPQA SASPDLTLKL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014631143.11e-117PREDICTED: zinc finger protein 4-like
RefseqXP_014631144.11e-117PREDICTED: zinc finger protein 4-like
RefseqXP_014631145.11e-117PREDICTED: zinc finger protein 4-like
SwissprotQ392632e-43ZFP4_ARATH; Zinc finger protein 4
TrEMBLI3SBZ41e-128I3SBZ4_MEDTR; Uncharacterized protein
STRINGGLYMA05G26990.11e-108(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13233192
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.12e-44zinc finger protein 4